IL_4V7P_206

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V7P|1|CA|G|801, 4V7P|1|CA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_206 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.0973

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V7P|1|CA|G|674
4V7P|1|CA|A|675
4V7P|1|CA|A|676
4V7P|1|CA|A|677
4V7P|1|CA|C|678
*
4V7P|1|CA|G|799
4V7P|1|CA|A|800
4V7P|1|CA|G|801
4V7P|1|CA|A|802
4V7P|1|CA|U|803
4V7P|1|CA|A|804
4V7P|1|CA|G|805
4V7P|1|CA|C|806

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CL

50S ribosomal protein L15