3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
UAG*CA
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7P_220 not in the Motif Atlas
Geometric match to IL_4LFB_053
Geometric discrepancy: 0.2857
The information below is about IL_4LFB_053
Detailed Annotation
Not an internal loop
Broad Annotation
Not an internal loop
Motif group
IL_58310.1
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
25

Unit IDs

4V7P|1|CA|U|877
4V7P|1|CA|A|878
4V7P|1|CA|G|879
*
4V7P|1|CA|C|898
4V7P|1|CA|A|899

Current chains

Chain CA
23S ribosomal RNA

Nearby chains

Chain CV
50S ribosomal protein L25

Coloring options:


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