IL_4V7P_221

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

4V7P|1|CA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_221 not in the Motif Atlas

Homologous match to IL_7RQB_033

Geometric discrepancy: 0.4455

The information below is about IL_7RQB_033

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

4V7P|1|CA|G|880
4V7P|1|CA|G|881
*
4V7P|1|CA|U|895
4V7P|1|CA|A|896
4V7P|1|CA|C|897

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CV

50S ribosomal protein L25