IL_4V7P_233

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4V7P|1|CA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_233 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.1423

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

4V7P|1|CA|C|1196
4V7P|1|CA|G|1197
4V7P|1|CA|U|1198
*
4V7P|1|CA|A|1247
4V7P|1|CA|G|1248
4V7P|1|CA|U|1249
4V7P|1|CA|G|1250

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CL

50S ribosomal protein L15

Chain CQ

50S ribosomal protein L20