IL_4V7P_239

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_239 not in the Motif Atlas

Homologous match to IL_4WF9_049

Geometric discrepancy: 0.162

The information below is about IL_4WF9_049

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4V7P|1|CA|G|1310
4V7P|1|CA|G|1311
4V7P|1|CA|U|1312
4V7P|1|CA|U|1313
*
4V7P|1|CA|A|1603
4V7P|1|CA|C|1604

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C4

50S ribosomal protein L34

Chain CT

50S ribosomal protein L23