IL_4V7P_244

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_244 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1188

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V7P|1|CA|C|1417
4V7P|1|CA|G|1418
4V7P|1|CA|A|1419
4V7P|1|CA|U|1420
4V7P|1|CA|G|1421
*
4V7P|1|CA|C|1577
4V7P|1|CA|U|1578
4V7P|1|CA|A|1579
4V7P|1|CA|A|1580
4V7P|1|CA|G|1581

Current chains

Chain CA

23S ribosomal RNA

Nearby chains