IL_4V7P_277

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

4V7P|1|CA|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_277 not in the Motif Atlas

Homologous match to IL_4WF9_088

Geometric discrepancy: 0.4315

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V7P|1|CA|U|2401
4V7P|1|CA|C|2402
4V7P|1|CA|C|2403
*
4V7P|1|CA|G|2414
4V7P|1|CA|G|2415

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C3

50S ribosomal protein L33

Chain C5

50S ribosomal protein L35

Chain CL

50S ribosomal protein L15

Chain CX

50S ribosomal protein L28