IL_4V7P_301

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

UUCCC*GAACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_301 not in the Motif Atlas

Homologous match to IL_5TBW_376

Geometric discrepancy: 0.1679

The information below is about IL_5TBW_376

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.9

Basepair signature

cWW-cSH-cWS-tSW-L-R-cWW-R

Number of instances in this motif group

9

Unit IDs

4V7P|1|CB|U|34
4V7P|1|CB|U|35
4V7P|1|CB|C|36
4V7P|1|CB|C|37
4V7P|1|CB|C|38
*
4V7P|1|CB|G|44
4V7P|1|CB|A|45
4V7P|1|CB|A|46
4V7P|1|CB|C|47
4V7P|1|CB|A|48

Current chains

Chain CB

5S ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain CF

50S ribosomal protein L5

Chain CO

50S ribosomal protein L18