IL_4V7P_302
3D structure
- PDB id
- 4V7P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Recognition of the amber stop codon by release factor RF1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.62 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7P_302 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1082
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V7P|1|CB|C|71
4V7P|1|CB|G|72
4V7P|1|CB|A|73
4V7P|1|CB|U|74
4V7P|1|CB|G|75
4V7P|1|CB|G|76
4V7P|1|CB|U|77
4V7P|1|CB|A|78
4V7P|1|CB|C|79
*
4V7P|1|CB|G|97
4V7P|1|CB|G|98
4V7P|1|CB|A|99
4V7P|1|CB|G|100
4V7P|1|CB|A|101
4V7P|1|CB|G|102
4V7P|1|CB|U|103
4V7P|1|CB|A|104
4V7P|1|CB|G|105
Current chains
- Chain CB
- 5S ribosomal RNA
Nearby chains
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain CM
- 50S ribosomal protein L16
- Chain CV
- 50S ribosomal protein L25
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