IL_4V7P_305

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GU*GAC

Length

5 nucleotides

Bulged bases

4V7P|1|DA|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_305 not in the Motif Atlas

Homologous match to IL_4LFB_002

Geometric discrepancy: 0.097

The information below is about IL_4LFB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V7P|1|DA|G|44
4V7P|1|DA|U|45
*
4V7P|1|DA|G|396
4V7P|1|DA|A|397
4V7P|1|DA|C|398

Current chains

Chain DA

16S rRNA (1504-MER)

Nearby chains

Chain DP

30S ribosomal protein S16