3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
GG*UGGCC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7P_318 not in the Motif Atlas
Homologous match to IL_4LFB_013
Geometric discrepancy: 0.1546
The information below is about IL_4LFB_013
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

4V7P|1|DA|G|292
4V7P|1|DA|G|293
*
4V7P|1|DA|U|304
4V7P|1|DA|G|305
4V7P|1|DA|G|306
4V7P|1|DA|C|307
4V7P|1|DA|C|308

Current chains

Chain DA
16S rRNA (1504-MER)

Nearby chains

Chain DL
30S ribosomal protein S12
Chain DP
30S ribosomal protein S16

Coloring options:


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