IL_4V7P_354

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CUACAAAG*CAAAAAGG

Length

16 nucleotides

Bulged bases

4V7P|1|DA|A|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7P|1|DA|C|1246
4V7P|1|DA|U|1247
4V7P|1|DA|A|1248
4V7P|1|DA|C|1249
4V7P|1|DA|A|1250
4V7P|1|DA|A|1251
4V7P|1|DA|A|1252
4V7P|1|DA|G|1253
*
4V7P|1|DA|C|1284
4V7P|1|DA|A|1285
4V7P|1|DA|A|1286
4V7P|1|DA|A|1287
4V7P|1|DA|A|1288
4V7P|1|DA|A|1289
4V7P|1|DA|G|1290
4V7P|1|DA|G|1291

Current chains

Chain DA

16S rRNA (1504-MER)

Nearby chains

Chain DG

30S ribosomal protein S7

Chain DI

30S ribosomal protein S9

Chain DJ

30S ribosomal protein S10

Chain DN

30S ribosomal protein S14

Chain DU

30S ribosomal protein Thx