IL_4V7P_356

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_356 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3445

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V7P|1|DA|C|1259
4V7P|1|DA|C|1260
4V7P|1|DA|A|1261
4V7P|1|DA|C|1262
*
4V7P|1|DA|G|1273
4V7P|1|DA|G|1274
4V7P|1|DA|A|1275
4V7P|1|DA|G|1276

Current chains

Chain DA

16S rRNA (1504-MER)

Nearby chains

Chain DU

30S ribosomal protein Thx