IL_4V7S_252

3D structure

PDB id

4V7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to telithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

4V7S|1|CA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7S_252 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2562

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V7S|1|CA|C|1407
4V7S|1|CA|A|1408
4V7S|1|CA|C|1409
*
4V7S|1|CA|G|1491
4V7S|1|CA|A|1492
4V7S|1|CA|A|1493
4V7S|1|CA|G|1494

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain DA

Large subunit ribosomal RNA; LSU rRNA