IL_4V7S_263

3D structure

PDB id

4V7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to telithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7S_263 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.1063

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V7S|1|DA|G|188
4V7S|1|DA|G|189
4V7S|1|DA|A|190
4V7S|1|DA|A|191
4V7S|1|DA|C|192
4V7S|1|DA|U|193
4V7S|1|DA|G|194
*
4V7S|1|DA|C|201
4V7S|1|DA|U|202
4V7S|1|DA|A|203
4V7S|1|DA|A|204
4V7S|1|DA|G|205
4V7S|1|DA|U|206
4V7S|1|DA|A|207
4V7S|1|DA|C|208

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DL

50S ribosomal protein L15

Chain DX

50S ribosomal protein L28