IL_4V7S_300

3D structure

PDB id

4V7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to telithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

4V7S|1|DA|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7S_300 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.3412

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

4V7S|1|DA|G|1202
4V7S|1|DA|U|1203
4V7S|1|DA|A|1204
4V7S|1|DA|A|1205
4V7S|1|DA|G|1206
*
4V7S|1|DA|U|1240
4V7S|1|DA|A|1241
4V7S|1|DA|U|1242
4V7S|1|DA|C|1243

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15

Chain DQ

50S ribosomal protein L20