IL_4V7S_328

3D structure

PDB id

4V7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to telithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

4V7S|1|DA|A|1899, 4V7S|1|DA|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7S_328 not in the Motif Atlas

Homologous match to IL_7A0S_067

Geometric discrepancy: 0.2443

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

4V7S|1|DA|U|1841
4V7S|1|DA|G|1842
*
4V7S|1|DA|U|1898
4V7S|1|DA|A|1899
4V7S|1|DA|A|1900
4V7S|1|DA|A|1901

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2