3D structure

PDB id
4V7S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to telithromycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
CGAAAUUCCUUG*CCUG
Length
16 nucleotides
Bulged bases
4V7S|1|DA|A|1938, 4V7S|1|DA|U|1944
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7S_332 not in the Motif Atlas
Geometric match to IL_7A0S_072
Geometric discrepancy: 0.146
The information below is about IL_7A0S_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.3
Basepair signature
cWW-L-R-L-cWW-L-L-R-L-R-L
Number of instances in this motif group
2

Unit IDs

4V7S|1|DA|C|1934
4V7S|1|DA|G|1935
4V7S|1|DA|A|1936
4V7S|1|DA|A|1937
4V7S|1|DA|A|1938
4V7S|1|DA|U|1939
4V7S|1|DA|U|1940
4V7S|1|DA|C|1941
4V7S|1|DA|C|1942
4V7S|1|DA|U|1943
4V7S|1|DA|U|1944
4V7S|1|DA|G|1945
*
4V7S|1|DA|C|1961
4V7S|1|DA|C|1962
4V7S|1|DA|U|1963
4V7S|1|DA|G|1964

Current chains

Chain DA
23S rRNA

Nearby chains

Chain CA
Small subunit ribosomal RNA; SSU rRNA
Chain DC
50S ribosomal protein L2

Coloring options:


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