IL_4V7T_206

3D structure

PDB id

4V7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7T_206 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1662

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V7T|1|CA|U|409
4V7T|1|CA|G|410
4V7T|1|CA|A|411
4V7T|1|CA|A|412
4V7T|1|CA|G|413
4V7T|1|CA|A|414
4V7T|1|CA|A|415
4V7T|1|CA|G|416
*
4V7T|1|CA|U|427
4V7T|1|CA|G|428
4V7T|1|CA|U|429
4V7T|1|CA|A|430
4V7T|1|CA|A|431
4V7T|1|CA|A|432
4V7T|1|CA|G|433

Current chains

Chain CA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain CD

30S ribosomal protein S4