IL_4V7T_267

3D structure

PDB id

4V7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V7T|1|DA|A|504, 4V7T|1|DA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7T_267 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.1608

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4V7T|1|DA|G|481
4V7T|1|DA|A|482
4V7T|1|DA|A|483
4V7T|1|DA|C|484
*
4V7T|1|DA|G|496
4V7T|1|DA|A|497
4V7T|1|DA|G|498
4V7T|1|DA|U|499
4V7T|1|DA|G|500
4V7T|1|DA|A|501
4V7T|1|DA|A|502
4V7T|1|DA|A|503
4V7T|1|DA|A|504
4V7T|1|DA|A|505
4V7T|1|DA|G|506
4V7T|1|DA|A|507
4V7T|1|DA|A|508
4V7T|1|DA|C|509

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24