IL_4V7U_080

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V7U|1|BA|A|504, 4V7U|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7U_080 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0647

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4V7U|1|BA|G|481
4V7U|1|BA|A|482
4V7U|1|BA|A|483
4V7U|1|BA|C|484
*
4V7U|1|BA|G|496
4V7U|1|BA|A|497
4V7U|1|BA|G|498
4V7U|1|BA|U|499
4V7U|1|BA|G|500
4V7U|1|BA|A|501
4V7U|1|BA|A|502
4V7U|1|BA|A|503
4V7U|1|BA|A|504
4V7U|1|BA|A|505
4V7U|1|BA|G|506
4V7U|1|BA|A|507
4V7U|1|BA|A|508
4V7U|1|BA|C|509

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24