IL_4V7U_286

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CUGC

Length

7 nucleotides

Bulged bases

4V7U|1|DA|G|914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7U_286 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3038

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

4V7U|1|DA|G|862
4V7U|1|DA|A|863
4V7U|1|DA|G|864
*
4V7U|1|DA|C|912
4V7U|1|DA|U|913
4V7U|1|DA|G|914
4V7U|1|DA|C|915

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DM

50S ribosomal protein L16

Chain DW

50S ribosomal protein L27