IL_4V7U_341

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

4V7U|1|DA|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7U_341 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.1586

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V7U|1|DA|U|2081
4V7U|1|DA|A|2082
4V7U|1|DA|G|2083
*
4V7U|1|DA|U|2236
4V7U|1|DA|G|2237
4V7U|1|DA|G|2238
4V7U|1|DA|G|2239

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2

Chain DX

50S ribosomal protein L28