IL_4V7U_361

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7U_361 not in the Motif Atlas

Geometric match to IL_8P9A_369

Geometric discrepancy: 0.3429

The information below is about IL_8P9A_369

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4V7U|1|DA|C|2651
4V7U|1|DA|C|2652
4V7U|1|DA|U|2653
4V7U|1|DA|A|2654
4V7U|1|DA|G|2655
4V7U|1|DA|U|2656
4V7U|1|DA|A|2657
4V7U|1|DA|C|2658
*
4V7U|1|DA|G|2663
4V7U|1|DA|G|2664
4V7U|1|DA|A|2665
4V7U|1|DA|C|2666
4V7U|1|DA|C|2667
4V7U|1|DA|G|2668
4V7U|1|DA|G|2669

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DG

50S ribosomal protein L6

Chain DK

50S ribosomal protein L14