IL_4V7U_385

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

4V7U|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7U_385 not in the Motif Atlas

Geometric match to IL_4V88_507

Geometric discrepancy: 0.2807

The information below is about IL_4V88_507

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V7U|1|BA|G|880
4V7U|1|BA|G|881
4V7U|1|BA|G|882
*
4V7U|1|BA|U|894
4V7U|1|BA|U|895
4V7U|1|BA|A|896
4V7U|1|BA|C|897

Current chains

Chain BA

23S rRNA

Nearby chains