IL_4V7U_406

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAGG*UGGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7U_406 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2374

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V7U|1|DA|G|1719
4V7U|1|DA|U|1720
4V7U|1|DA|G|1721
4V7U|1|DA|A|1722
4V7U|1|DA|G|1723
4V7U|1|DA|G|1724
*
4V7U|1|DA|U|1736
4V7U|1|DA|G|1737
4V7U|1|DA|G|1738
4V7U|1|DA|A|1739
4V7U|1|DA|G|1740
4V7U|1|DA|C|1741

Current chains

Chain DA

23S rRNA

Nearby chains