3D structure

PDB id
4V7U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to erythromycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUGAGG*UGGAGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7U_406 not in the Motif Atlas
Geometric match to IL_4V88_462
Geometric discrepancy: 0.2374
The information below is about IL_4V88_462
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_82488.1
Basepair signature
cWW-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

4V7U|1|DA|G|1719
4V7U|1|DA|U|1720
4V7U|1|DA|G|1721
4V7U|1|DA|A|1722
4V7U|1|DA|G|1723
4V7U|1|DA|G|1724
*
4V7U|1|DA|U|1736
4V7U|1|DA|G|1737
4V7U|1|DA|G|1738
4V7U|1|DA|A|1739
4V7U|1|DA|G|1740
4V7U|1|DA|C|1741

Current chains

Chain DA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3281 s