IL_4V7U_429

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

4V7U|1|DA|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7U_429 not in the Motif Atlas

Homologous match to IL_9DFE_099

Geometric discrepancy: 0.1268

The information below is about IL_9DFE_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

4V7U|1|DA|U|2522
4V7U|1|DA|G|2523
*
4V7U|1|DA|C|2540
4V7U|1|DA|A|2541
4V7U|1|DA|A|2542
4V7U|1|DA|G|2543

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DJ

50S ribosomal protein L13