IL_4V7V_080

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V7V|1|BA|A|504, 4V7V|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7V_080 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0637

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4V7V|1|BA|G|481
4V7V|1|BA|A|482
4V7V|1|BA|A|483
4V7V|1|BA|C|484
*
4V7V|1|BA|G|496
4V7V|1|BA|A|497
4V7V|1|BA|G|498
4V7V|1|BA|U|499
4V7V|1|BA|G|500
4V7V|1|BA|A|501
4V7V|1|BA|A|502
4V7V|1|BA|A|503
4V7V|1|BA|A|504
4V7V|1|BA|A|505
4V7V|1|BA|G|506
4V7V|1|BA|A|507
4V7V|1|BA|A|508
4V7V|1|BA|C|509

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24