IL_4V7V_087

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

4V7V|1|BA|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7V_087 not in the Motif Atlas

Homologous match to IL_5J7L_262

Geometric discrepancy: 0.082

The information below is about IL_5J7L_262

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

4V7V|1|BA|U|702
4V7V|1|BA|U|703
*
4V7V|1|BA|G|728
4V7V|1|BA|G|729
4V7V|1|BA|A|730

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2