IL_4V7V_184

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

UGA*UCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGA,UCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7V_184 not in the Motif Atlas

Geometric match to IL_3SZX_002

Geometric discrepancy: 0.1724

The information below is about IL_3SZX_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7V|1|BB|U|32
4V7V|1|BB|G|33
4V7V|1|BB|A|34
*
4V7V|1|BB|U|48
4V7V|1|BB|C|49
4V7V|1|BB|A|50

Current chains

Chain BB

5S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S ribosomal protein L5

Chain BO

50S ribosomal protein L18