IL_4V7V_228
3D structure
- PDB id
- 4V7V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to clindamycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.29 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7V_228 not in the Motif Atlas
- Homologous match to IL_5J7L_037
- Geometric discrepancy: 0.0938
- The information below is about IL_5J7L_037
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
4V7V|1|CA|C|779
4V7V|1|CA|A|780
4V7V|1|CA|A|781
4V7V|1|CA|A|782
4V7V|1|CA|C|783
*
4V7V|1|CA|G|799
4V7V|1|CA|G|800
4V7V|1|CA|U|801
4V7V|1|CA|A|802
4V7V|1|CA|G|803
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CK
- 30S ribosomal protein S11
- Chain CU
- 30S ribosomal protein S21
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: