IL_4V7V_261
3D structure
- PDB id
- 4V7V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to clindamycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.29 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7V_261 not in the Motif Atlas
- Homologous match to IL_5J7L_250
- Geometric discrepancy: 0.1172
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V7V|1|DA|G|188
4V7V|1|DA|G|189
4V7V|1|DA|A|190
4V7V|1|DA|A|191
4V7V|1|DA|C|192
4V7V|1|DA|U|193
4V7V|1|DA|G|194
*
4V7V|1|DA|C|201
4V7V|1|DA|U|202
4V7V|1|DA|A|203
4V7V|1|DA|A|204
4V7V|1|DA|G|205
4V7V|1|DA|U|206
4V7V|1|DA|A|207
4V7V|1|DA|C|208
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D3
- 50S ribosomal protein L35
- Chain DL
- 50S ribosomal protein L15
- Chain DX
- 50S ribosomal protein L28
Coloring options: