IL_4V7V_276

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7V_276 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.1232

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

4V7V|1|DA|U|703
4V7V|1|DA|G|704
4V7V|1|DA|A|705
4V7V|1|DA|A|706
4V7V|1|DA|G|707
*
4V7V|1|DA|U|724
4V7V|1|DA|G|725
4V7V|1|DA|G|726
4V7V|1|DA|A|727
4V7V|1|DA|G|728

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2