IL_4V7V_340

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

4V7V|1|DA|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7V_340 not in the Motif Atlas

Geometric match to IL_8C3A_056

Geometric discrepancy: 0.3953

The information below is about IL_8C3A_056

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V7V|1|DA|U|2401
4V7V|1|DA|U|2402
4V7V|1|DA|C|2403
*
4V7V|1|DA|G|2414
4V7V|1|DA|G|2415

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L33

Chain D3

50S ribosomal protein L35

Chain DL

50S ribosomal protein L15