IL_4V7V_376

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GGC*GACC

Length

7 nucleotides

Bulged bases

4V7V|1|DA|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7V_376 not in the Motif Atlas

Geometric match to IL_4E48_005

Geometric discrepancy: 0.2579

The information below is about IL_4E48_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7V|1|DA|G|35
4V7V|1|DA|G|36
4V7V|1|DA|C|37
*
4V7V|1|DA|G|442
4V7V|1|DA|A|443
4V7V|1|DA|C|444
4V7V|1|DA|C|445

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DQ

50S ribosomal protein L20