IL_4V7W_011

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGG*CUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7W_011 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.3004

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

4V7W|1|AA|C|155
4V7W|1|AA|G|156
4V7W|1|AA|G|157
4V7W|1|AA|G|158
*
4V7W|1|AA|C|163
4V7W|1|AA|U|164
4V7W|1|AA|C|165
4V7W|1|AA|G|166

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20