IL_4V7W_323

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

4V7W|1|DA|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7W_323 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.0962

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

4V7W|1|DA|A|2459
4V7W|1|DA|U|2460
4V7W|1|DA|C|2461
*
4V7W|1|DA|G|2489
4V7W|1|DA|G|2490
4V7W|1|DA|U|2491
4V7W|1|DA|U|2492
4V7W|1|DA|U|2493

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain DQ

50S ribosomal protein L16