IL_4V7X_211

3D structure

PDB id

4V7X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

4V7X|1|CA|A|1394

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7X_211 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3142

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

4V7X|1|CA|G|922
4V7X|1|CA|A|923
4V7X|1|CA|C|924
*
4V7X|1|CA|G|1392
4V7X|1|CA|U|1393
4V7X|1|CA|A|1394
4V7X|1|CA|C|1395

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CE

30S ribosomal protein S5