IL_4V7X_363

3D structure

PDB id

4V7X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4V7X|1|CA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7X_363 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1164

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V7X|1|CA|G|409
4V7X|1|CA|G|410
4V7X|1|CA|A|411
4V7X|1|CA|A|412
4V7X|1|CA|G|413
4V7X|1|CA|A|414
4V7X|1|CA|A|415
4V7X|1|CA|G|416
*
4V7X|1|CA|U|427
4V7X|1|CA|G|428
4V7X|1|CA|U|429
4V7X|1|CA|A|430
4V7X|1|CA|A|431
4V7X|1|CA|A|432
4V7X|1|CA|C|433

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CD

30S ribosomal protein S4