IL_4V7X_386

3D structure

PDB id

4V7X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

4V7X|1|DA|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7X_386 not in the Motif Atlas

Homologous match to IL_9DFE_060

Geometric discrepancy: 0.4497

The information below is about IL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46086.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

4V7X|1|DA|U|1481
4V7X|1|DA|G|1482
*
4V7X|1|DA|C|1506
4V7X|1|DA|A|1507
4V7X|1|DA|A|1508
4V7X|1|DA|C|1509
4V7X|1|DA|A|1509|||A
4V7X|1|DA|A|1509|||B
4V7X|1|DA|G|1510

Current chains

Chain DA

23S ribosomal RNA

Nearby chains