IL_4V7Y_010

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGACAAC*GCUAAUCC

Length

15 nucleotides

Bulged bases

4V7Y|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7Y_010 not in the Motif Atlas

Homologous match to IL_6CZR_121

Geometric discrepancy: 0.4241

The information below is about IL_6CZR_121

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.5

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V7Y|1|AA|G|147
4V7Y|1|AA|G|148
4V7Y|1|AA|A|149
4V7Y|1|AA|C|150
4V7Y|1|AA|A|151
4V7Y|1|AA|A|152
4V7Y|1|AA|C|153
*
4V7Y|1|AA|G|168
4V7Y|1|AA|C|169
4V7Y|1|AA|U|170
4V7Y|1|AA|A|171
4V7Y|1|AA|A|172
4V7Y|1|AA|U|173
4V7Y|1|AA|C|174
4V7Y|1|AA|C|175

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20