IL_4V7Y_020

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAGAAGC*GUGUAAAC

Length

17 nucleotides

Bulged bases

4V7Y|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7Y_020 not in the Motif Atlas

Homologous match to IL_6CZR_129

Geometric discrepancy: 0.1575

The information below is about IL_6CZR_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58819.1

Basepair signature

cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V7Y|1|AA|G|409
4V7Y|1|AA|G|410
4V7Y|1|AA|A|411
4V7Y|1|AA|A|412
4V7Y|1|AA|G|413
4V7Y|1|AA|A|414
4V7Y|1|AA|A|415
4V7Y|1|AA|G|416
4V7Y|1|AA|C|417
*
4V7Y|1|AA|G|426
4V7Y|1|AA|U|427
4V7Y|1|AA|G|428
4V7Y|1|AA|U|429
4V7Y|1|AA|A|430
4V7Y|1|AA|A|431
4V7Y|1|AA|A|432
4V7Y|1|AA|C|433

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4