IL_4V7Y_180

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGG*CUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7Y_180 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3183

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V7Y|1|CA|C|155
4V7Y|1|CA|G|156
4V7Y|1|CA|G|157
4V7Y|1|CA|G|158
*
4V7Y|1|CA|C|163
4V7Y|1|CA|U|164
4V7Y|1|CA|C|165
4V7Y|1|CA|G|166

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20