3D structure

PDB id
4V7Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGG*CCCG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7Y_341 not in the Motif Atlas
Geometric match to IL_5TBW_056
Geometric discrepancy: 0.3808
The information below is about IL_5TBW_056
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

4V7Y|1|AA|C|656
4V7Y|1|AA|G|657
4V7Y|1|AA|G|658
*
4V7Y|1|AA|C|747
4V7Y|1|AA|C|748
4V7Y|1|AA|C|749
4V7Y|1|AA|G|750

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AH
30S ribosomal protein S8
Chain AO
30S ribosomal protein S15

Coloring options:


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