IL_4V7Y_346

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGCAUGG*UCAGCAUG

Length

15 nucleotides

Bulged bases

4V7Y|1|AA|C|1054, 4V7Y|1|AA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7Y_346 not in the Motif Atlas

Geometric match to IL_4V88_510

Geometric discrepancy: 0.1578

The information below is about IL_4V88_510

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62984.1

Basepair signature

cWW-tHS-tWH-cWH-cWW-L-L-cWW

Number of instances in this motif group

1

Unit IDs

4V7Y|1|AA|U|1052
4V7Y|1|AA|G|1053
4V7Y|1|AA|C|1054
4V7Y|1|AA|A|1055
4V7Y|1|AA|U|1056
4V7Y|1|AA|G|1057
4V7Y|1|AA|G|1058
*
4V7Y|1|AA|U|1199
4V7Y|1|AA|C|1200
4V7Y|1|AA|A|1201
4V7Y|1|AA|G|1202
4V7Y|1|AA|C|1203
4V7Y|1|AA|A|1204
4V7Y|1|AA|U|1205
4V7Y|1|AA|G|1206

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14