IL_4V7Y_355

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7Y_355 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.171

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V7Y|1|CA|G|446
4V7Y|1|CA|G|447
4V7Y|1|CA|A|448
4V7Y|1|CA|C|449
4V7Y|1|CA|G|450
*
4V7Y|1|CA|C|483
4V7Y|1|CA|G|484
4V7Y|1|CA|G|485
4V7Y|1|CA|U|486
4V7Y|1|CA|A|487
4V7Y|1|CA|C|488

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CP

30S ribosomal protein S16