IL_4V80_077

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V80|1|BA|A|504, 4V80|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V80_077 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0534

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4V80|1|BA|G|481
4V80|1|BA|A|482
4V80|1|BA|A|483
4V80|1|BA|C|484
*
4V80|1|BA|G|496
4V80|1|BA|A|497
4V80|1|BA|G|498
4V80|1|BA|U|499
4V80|1|BA|G|500
4V80|1|BA|A|501
4V80|1|BA|A|502
4V80|1|BA|A|503
4V80|1|BA|A|504
4V80|1|BA|A|505
4V80|1|BA|G|506
4V80|1|BA|A|507
4V80|1|BA|A|508
4V80|1|BA|C|509

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24