IL_4V80_141

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V80|1|BA|A|1938, 4V80|1|BA|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V80_141 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1372

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

4V80|1|BA|C|1934
4V80|1|BA|G|1935
4V80|1|BA|A|1936
4V80|1|BA|A|1937
4V80|1|BA|A|1938
4V80|1|BA|U|1939
4V80|1|BA|U|1940
4V80|1|BA|C|1941
4V80|1|BA|C|1942
4V80|1|BA|U|1943
4V80|1|BA|U|1944
4V80|1|BA|G|1945
*
4V80|1|BA|C|1961
4V80|1|BA|C|1962
4V80|1|BA|U|1963
4V80|1|BA|G|1964

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2