IL_4V80_254

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

4V80|1|DA|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V80_254 not in the Motif Atlas

Geometric match to IL_5J7L_253

Geometric discrepancy: 0.3169

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V80|1|DA|C|274
4V80|1|DA|C|275
4V80|1|DA|U|276
4V80|1|DA|G|277
4V80|1|DA|A|278
4V80|1|DA|A|279
4V80|1|DA|U|280
4V80|1|DA|C|281
*
4V80|1|DA|G|359
4V80|1|DA|U|360
4V80|1|DA|G|361
4V80|1|DA|A|362
4V80|1|DA|G|363

Current chains

Chain DA

23S rRNA

Nearby chains