IL_4V80_330

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUAC*GUGUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V80_330 not in the Motif Atlas

Geometric match to IL_8P9A_467

Geometric discrepancy: 0.3745

The information below is about IL_8P9A_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07469.3

Basepair signature

cWW-tSH-cWW-cSH-R-cWW

Number of instances in this motif group

3

Unit IDs

4V80|1|DA|A|2459
4V80|1|DA|U|2460
4V80|1|DA|A|2461
4V80|1|DA|C|2462
*
4V80|1|DA|G|2488
4V80|1|DA|U|2489
4V80|1|DA|G|2490
4V80|1|DA|U|2491
4V80|1|DA|U|2492
4V80|1|DA|U|2493

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L16